SNP Profiles matching GF 32

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._RUQ_554	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
2._MAR_1	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
3._MAR_20	_	_	CC	TT	CC	_	AA	-	AA	CC	_	_	AA	_
4._RUQ_557	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
5._RUQ_553	TT	CC	CC	TT	CC	GG	AA	CC	AA	-	GG	GG	AA	-
6._RUQ_683	TT	CC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
1._RUQ_554	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
2._MAR_1	AA	CC	TT	TT	GG	AA	_	TT	_	-	_	_	_	GG
3._MAR_20	AA	CC	TT	TT	GG	AA	_	TT	_	-	_	_	_	GG
4._RUQ_557	AA	CC	TT	TT	GG	AA	CC	TT	TT	GG	GG	TT	AA	GG
5._RUQ_553	-	CC	TT	-	GG	AA	TT	TT	TT	GG	-	TT	-	-
6._RUQ_683	AA	CC	-	TT	GG	AA	CC	TT	TT	GG	GG	TT	CC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	TT	CC	GG	GG	TT	TT	TT	TT	CC	GG	AA
1._RUQ_554	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
2._MAR_1	CC	CC	AA	_	CC	_	_	_	TT	_	_	CC	GG	AA
3._MAR_20	CC	CC	AA	_	CC	_	_	_	TT	_	_	CC	GG	AA
4._RUQ_557	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
5._RUQ_553	CC	CC	AA	-	CC	GG	-	TT	TT	TT	-	-	GG	AA
6._RUQ_683	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA

Input profile: GF_32 RUQ_648

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._GDL_7 RUQ_554

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._MAR_1

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B188 T1

Dapeng Zhang, 2014

3._MAR_20

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B253 T1

Dapeng Zhang, 2014

4._MAR_9 RUQ_557

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._GDL_3 RUQ_553

90.3 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._GS_13 RUQ_683

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching GF 32

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Input profile: GF_32 RUQ_648

1._GDL_7 RUQ_554

95.2 % 42 shared markers

2._MAR_1

91.3 % 23 shared markers

3._MAR_20

91.3 % 23 shared markers

4._MAR_9 RUQ_557

90.5 % 42 shared markers

5._GDL_3 RUQ_553

90.3 % 31 shared markers

6._GS_13 RUQ_683

90.2 % 41 shared markers

95.2 %
42 shared markers

91.3 %
23 shared markers

91.3 %
23 shared markers

90.5 %
42 shared markers

90.3 %
31 shared markers

90.2 %
41 shared markers